DOI: https://doi.org/10.14710/jitaa.37.1.1-9

THE USE OF MICROSATELLITE MARKERS TO STUDY GENETIC DIVERSITY IN INDONESIAN SHEEP

*J. Jakaria  -  Faculty of Animal Science, Bogor Agricultural University,, Indonesia
M.S.A. Zein  -  Indonesian Institute of Sciences, Jl. Raya Bogor Km 46, Cibinong 16911, Bogor, Indonesia
S. Sulandari  -  Indonesian Institute of Sciences, Jl. Raya Bogor Km 46, Cibinong 16911, Bogor, Indonesia
S. Subandriyo  -  Indonesian Center for Animal Science Research and Development (ICASRD),, Indonesia
M. Muladno  -  Faculty of Animal Science, Bogor Agricultural University,, Indonesia

Citation Format:
Abstract
The purpose of this research was to study genetic diversity in Indonesian sheep population usingmicrosatellite markers. A total of 18 microsatellite loci have been used for genotyping Indonesian sheep.Total sheep blood 200 samples were extracted from garut sheep of fighting and meat types, purbalinggasheep, batur sheep and jember sheep populations by using a salting out method. Microsatellite loci datawere analyzed using POPGENE 3.2 software. Based on this study obtained 180 alleles from 17microsatellite loci, while average number of alleles was 6.10 alleles (6 to 18 alleles) from fiveIndonesian sheep populations (garut sheep of fighting type, garut sheep of meat type, purbalingga sheep,batur sheep and jember sheep population). The average of observed heterozygosity (Ho) and expectedheterozygosity (He) values were 0.5749 and 0.6896, respectively, while the genetic differentiation forinbreeding among population (FIS), within population (FIT) and average genetic differentiation (FST)were 0.1006, 0.1647 and 0.0712, respectively. Genetic distance and genetic tree showed that Indonesiansheep population was distinct from garut sheep of fighting and meat types, purbalingga sheep, batursheep and jember sheep population. Based on this results were needed a strategy for conservation andbreeding programs in each Indonesian sheep population.
Fulltext View|Download
Keywords: Indonesian sheep. microsatellite marker. genetic diversity

Article Metrics:

Article Info
Section: Articles
Language : EN
Recent articles
A SUPPORTING AID FOR BEEF CATTLE INVESTMENT OF FARM HOUSEHOLD IN CENTRAL JAVA CHARACTERISTICS, STABILITY AND ANTIMICROBIAL ACTIVITY OF LACTIC ACID BACTERIA (Leuconostoc sp) ISOLATED FROM BROILER’S CAECUM DURING STORAGE PHYSICAL, CHEMICAL AND SENSORY PROPERTIES OF KENARI (Canariun indicum L.) SHELL LIQUID SMOKE-IMMERSED-BEEF ON DIFFERENT LEVEL OF DILUTION More recent articles
Most cited articles
Body measurements and testosteron level of male Timor deer (Rusa timorensis) at various hierarchies A DEVELOPMENT STRATEGY FOR DAIRY GOAT FARMS IN BOGOR REGENCY - WEST JAVA THE ANALYSIS OF BEEF CATTLE SUBSYSTEM AGRIBUSINESS IMPLEMENTATION IN CENTRAL JAVA PROVINCE, INDONESIA TOTAL NON-STRUCTURAL CARBOHYDRATE (TNC) OF THREE CULTIVARS OF NAPIER GRASS (Pennisetum purpureum) AT VEGETATIVE AND REPRODUCTIVE PHASE MILK CONSUMPTION BEHAVIOR IN HOUSEHOLD HAVING CHILDREN IN GROWING AGE IN YOGYAKARTA SPECIAL PROVINCE More cited articles

Last update:

  1. Using microsatellite markers to analyze genetic diversity in 14 sheep types in Iran

    Mohammad Taghi Vajed Ebrahimi, Mohammadreza Mohammadabadi, Ali Esmailizadeh. Archives Animal Breeding, 60 (3), 2017. doi: 10.5194/aab-60-183-2017

  2. The genetic profiles and maternal origin of local sheep breeds on Java Island (Indonesia) based on complete mitochondrial DNA D-loop sequences

    Alek Ibrahim, I Gede Suparta Budisatria, Rini Widayanti, Wayan Tunas Artama. Veterinary World, 13 (12), 2020. doi: 10.14202/vetworld.2020.2625-2634

  3. Wool characteristics of Batur sheep in Banjarnegara District, Central Java

    Bess Tiesnamurti, Gresy Eva Teresia, Zuratih, Rubiyo, C. Indrawanto. E3S Web of Conferences, 306 , 2021. doi: 10.1051/e3sconf/202130605019

  4. Genetic characterization of Koraput sheep of Odisha

    SANJEEV SINGH, K N RAJA, INDRAJIT GANGULY, REENA ARORA, R S KATARIA. The Indian Journal of Animal Sciences, 85 (6), 2015. doi: 10.56093/ijans.v85i6.49340

  5. Genetic diversity among Sawakni, Berberi and Najdi sheep breeds in Saudi Arabia using microsatellites markers

    Hossam Mahmoud Ahmed, swelum Ayman, Abul Farah Mohammad, Alanazi Khalid., Rady Ahmed, Salah Mahmoud, Amor Nabil, Mohammed Osam. African Journal of Biotechnology, 16 (4), 2017. doi: 10.5897/AJB2016.15785

Last update: 2024-11-17 21:30:46

  1. Using microsatellite markers to analyze genetic diversity in 14 sheep types in Iran

    Mohammad Taghi Vajed Ebrahimi, Mohammadreza Mohammadabadi, Ali Esmailizadeh. Archives Animal Breeding, 60 (3), 2017. doi: 10.5194/aab-60-183-2017

  2. The genetic profiles and maternal origin of local sheep breeds on Java Island (Indonesia) based on complete mitochondrial DNA D-loop sequences

    Alek Ibrahim, I Gede Suparta Budisatria, Rini Widayanti, Wayan Tunas Artama. Veterinary World, 13 (12), 2020. doi: 10.14202/vetworld.2020.2625-2634

  3. Single nucleotide polymorphisms (SNPs) in exon 6 of lecithin cholesterol acyltransferase (LCAT) gene in Indonesian local sheep

    Hidayati . Media Peternakan, 37 (2), 2014. doi: 10.5398/medpet.2014.37.2.71

  4. Genetic variability of sheep populations of Saudi Arabia using microsatellite markers

    Mahmoud A.H.. Indian Journal of Animal Research, 54 (4), 2020. doi: 10.18805/ijar.B-775

  5. Genetic diversity of bali cattle based on microsatellite marker in indonesian breeding centre

    Septian W.A.. Media Peternakan, 38 (1), 2015. doi: 10.5398/medpet.2015.38.1.12

  6. Genetic characterization of Koraput sheep of Odisha

    SANJEEV SINGH, K N RAJA, INDRAJIT GANGULY, REENA ARORA, R S KATARIA. The Indian Journal of Animal Sciences, 85 (6), 2015. doi: 10.56093/ijans.v85i6.49340

  7. Genetic characterization of Awassi (Naeimi) sheep in Saudi Arabia based on microsatellite markers

    Mahmoud A.. Research Journal of Biotechnology, 13 (3), 2018.

  8. Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers

    Saputraa F.. Tropical Animal Science Journal, 43 (3), 2020. doi: 10.5398/tasj.2020.43.3.191