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Pyrazine and Furan Derivative Activity Prediction on Type 2 Diabetic Mellitus: In silico Study

1Department of Pharmacy, Faculty of Health Science, Universitas Perjuangan, Tasikmalaya 46115, West Java, Indonesia

2Faculty of Pharmacy, Universitas Bakti Tunas Husada, Tasikmalaya, West Java, Indonesia

Received: 19 Jan 2024; Revised: 21 Apr 2024; Accepted: 2 May 2024; Published: 31 May 2024.
Open Access Copyright 2024 Jurnal Kimia Sains dan Aplikasi under http://creativecommons.org/licenses/by-sa/4.0.

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Abstract

Diabetes Mellitus (DM) is a chronic disease that occurs when the pancreas does not produce enough insulin, or the body cannot use insulin effectively. Type 2 DM treatment can be done using antidiabetic drugs, but the continuous use of synthetic drugs will cause side effects. Empirically, the people of Nias Indonesia use palm juice (Arenga pinnata Merr.) as an antidiabetic, which can reduce blood glucose levels. This study aimed to find the active compounds in palm juice that can potentially be an antidiabetic type 2 using an in silico approach. The methods used were toxicity screening, profile pharmacokinetics, drug scanning, docking, and molecular dynamics simulation. Screening, molecular docking, and molecular dynamics of 30 compounds generated from pyrazine and furan revealed that two compounds, PF 16 and PF 30, can bind to receptors and produce lower ∆G values than metformin HCl. Molecular dynamics simulation results using the MM-GBSA calculation method showed that the PF 16 compound was more selective than the 2PDY (aldose reductase) with a value of -39.23 kcal/mol, while compound PF 30 was more selective to 1Z89 (aldose reductase) with a value of -7.36 kcal/mol. It can be concluded that the level of affinity of the PF 30 compound to the 1Z89 receptor and the PF 16 compound to the 2PDY were predicted to have the potential as antidiabetic (DM type 2).

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Keywords: Arenga pinnata Merr.; diabetes mellitus; in silico; pyrazine; furan derivatives

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  1. World Health Organization, The Global Diabetes Compact: what you need to know, Oms, 2021
  2. International Diabetes Federation, in, 2013,
  3. American Diabetes Association, Standards of Medical Care in Diabetes—2013, Diabetes Care, 36, Supplement_1, (2012), S11-S66 https://doi.org/10.2337/dc13-S011
  4. Departemen Kesehatan Republik Indonesia, Pharmaceutical Care Untuk Penyakit Diabetes Mellitus, Departemen Kesehatan Republik Indonesia, Jakarta, 2005,
  5. Derek G. Waller, Anthony P. Sampson, 40 - Diabetes mellitus, in: D.G. Waller, A.P. Sampson (Eds.) Medical Pharmacology and Therapeutics (Fifth Edition), Elsevier, 2018, https://doi.org/10.1016/B978-0-7020-7167-6.00040-3
  6. Dewa Ayu Swastini, Gusti Ayu Prianka Adi Shaswati, I Putu Sudiatmika Widnyana, Amirul Amin, Lalu Angga Sadi Kusuma, Anak Agung Rai Yadnya Putra, Putu Oka Samirana, Penurunan Kadar Glukosa Darah dan Gambaran Histopatologi Pankreas dengan Pemberian Gula Aren (Arenga pinnata) pada Tikus Jantan Galur Wistar yang Diinduksi Aloksan, Indonesia Medicus Veterinus, 7, 2, (2018), 10-21 https://doi.org/10.19087/imv.2018.7.2.94
  7. Mayukh Banerjee, Rubiya Khursheed, Kumar Ankit Yadav, Kumar Sachin Singh, Monica Gulati, Kumar Devendra Pandey, Kumar Pranav Prabhakar, Rajesh Kumar, Omji Porwal, Ankit Awasthi, Yogita Kumari, Gurmandeep Kaur, Clarisse Ayinkamiye, Rahul Prashar, Diksha Mankotia, Kumar Narendra Pandey, A Systematic Review on Synthetic Drugs and Phytopharmaceuticals Used to Manage Diabetes, Current Diabetes Reviews, 16, 4, (2020), 340-356 http://dx.doi.org/10.2174/1573399815666190822165141
  8. Jana Blahova, Monika Martiniakova, Martina Babikova, Veronika Kovacova, Vladimira Mondockova, Radoslav Omelka, Pharmaceutical Drugs and Natural Therapeutic Products for the Treatment of Type 2 Diabetes Mellitus, Pharmaceuticals, 14, 8, (2021), 806 https://doi.org/10.3390/ph14080806
  9. Shubham Kumar, Anu Mittal, Dinesh Babu, Amit Mittal, Herbal Medicines for Diabetes Management and its Secondary Complications, Current Diabetes Reviews, 17, 4, (2021), 437-456 http://dx.doi.org/10.2174/1573399816666201103143225
  10. A. Kolonial Prodjosantoso, Ade Kurnia Puri Tanjung, Binti Mutammimah, Muhammad Hisyam, Muhammad Fikri M. Basri, Nely Tonapa, Nur Elisa Hawa, Sandra Desfa Jayanti, Suryani S. Situmorang, Titah Nor Fahmi, Etnokimia: Dalam Budaya Nusantara - Volume 2, PT Kanisius, Daerah Istimewa Yogyakarta, 2023,
  11. C. W. Ho, W. M. Wan Aida, M. Y. Maskat, H. Osman, Changes in volatile compounds of palm sap (Arenga pinnata) during the heating process for production of palm sugar, Food Chemistry, 102, 4, (2007), 1156-1162 https://doi.org/10.1016/j.foodchem.2006.07.004
  12. Badrud Duza Mohammad, Mirza Shahed Baig, Neeraj Bhandari, Falak A. Siddiqui, Sharuk L. Khan, Zubair Ahmad, Farhat S. Khan, Priti Tagde, Philippe Jeandet, Heterocyclic Compounds as Dipeptidyl Peptidase-IV Inhibitors with Special Emphasis on Oxadiazoles as Potent Anti-Diabetic Agents, Molecules, 27, 18, (2022), 6001 https://doi.org/10.3390/molecules27186001
  13. Laliteshwar Pratap Singh, A Review of Heterocyclic Compounds for Anti-Diabetic Activity, Systematic Reviews in Pharmacy, 13, 6, (2022), 410-413
  14. Therapeutic Goods Administration, in, Australian Government: Department of Health and Aged Care, 2020,
  15. Yohanes Bare, Dewi Ratih Tirto Sari, Yoga Tribakti Rachmad, Sri Sulistyaningsih Natalia Daeng Tiring, Apriani Herni Rophi, Fitra Arya Dwi Nugraha, Prediction potential chlorogenic acid as inhibitor ace (in silico study), Bioscience, 3, 2, (2019), 197 https://doi.org/10.24036/0201932105856-0-00
  16. Kamiel Roesman Bachtiar, Susanti Susanti, Richa Mardianingrum, Uji Aktivitas Antiinflamasi Senyawa dalam Minyak Atsiri Rimpang Bangle (Zingiber purpureum Roxb) Secara In silico, Journal of Pharmacopolium, 4, 1, (2021), 36-43 http://dx.doi.org/10.36465/jop.v4i1.719
  17. Garrett M. Morris, Ruth Huey, William Lindstrom, Michel F. Sanner, Richard K. Belew, David S. Goodsell, Arthur J. Olson, AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility, Journal of Computational Chemistry, 30, 16, (2009), 2785-2791 https://doi.org/10.1002/jcc.21256
  18. Indah Wulan Sari, Junaidin Junaidin, Dina Pratiwi, Studi Molecular Docking Senyawa Flavonoid Herba Kumis Kucing (Orthosiphon Stamineus B.) Pada Reseptor Α-Glukosidase Sebagai Antidiabetes Tipe 2, Jurnal Farmagazine, 7, 2, (2020), 54-60
  19. Ruswanto Ruswanto, Molecular docking empat turunan isonicotinohydrazide pada mycobacterium tuberculosis enoyl-acyl carrier protein reductase (InhA), Jurnal Kesehatan Bakti Tunas Husada: Jurnal Ilmu-Ilmu Keperawatan, Analis Kesehatan Dan Farmasi, 13, 1, (2015), 135-141
  20. Ruswanto Ruswanto, Mardhiah Mardhiah, Richa Mardianingrum, Korry Novitriani, Sintesis dan Studi In silico Senyawa 3-Nitro-N'-[(Pyridin-4-Yl) Carbonyl] Benzohydrazide sebagai Kandidat Antituberkulosis, Chimica et Natura Acta, 3, 2, (2015), 54-61 https://doi.org/10.24198/cna.v3.n2.9183
  21. Ruswanto Ruswanto, W. T. Wulandari, S. S. Rahayu, R. Mardianingrum, N. D. Hidayati, Bioaktivitas dan Studi In silico Senyawa Turunan N’-Benzoylisonicotinohydrazide (4-Methyl, 4-Chloro dan 3, 5-Dinitro) Pada Mycobacterium tuberculosis (H37rv) Bakteri Gram Positif Serta Bakteri Gram Negatif, Pharmacoscript, 2, 2, (2019),
  22. Yesaya Reformyada Nusantoro, Arif Fadlan, Analisis sifat mirip obat, prediksi ADMET, dan penambatan molekular isatinil-2-aminobenzoilhidrazon dan kompleks logam transisi Co (II), Ni (II), Cu (II), Zn (II) Terhadap BCL2-XL, Akta Kimia Indonesia, 5, 2, (2020), 114-126
  23. Tiara Ajeng Listyani, Rina Herowati, Molecular Docking Analysis of Derivate Phthalimide Compounds as Non-Nucleosida HIV-1 Reverse Transcriptase Inhibitor, Jurnal Farmasi Indonesia, 15, 2, (2018), 123-134 https://doi.org/10.31001/jfi.v15i2.445
  24. D. A. Case, R. M. Betz, D. S. Cerutti, T. E. Cheatham, III, T. A. Darden, R. E. Duke, T. J. Giese, A. W. Goetz, N. Homeyer, S. Izadi, P. Janowski, J. Kaus, A. Kovalenko, T. S. Lee, S. LeGrand, P. Li, C. Lin, T. Luchko, R. Luo, B. Madej, D. Mermelstein, K. M. Merz, G. Monard, H. Nguyen, H. T. Nguyen, I. Omelyan, A. Onufriev, D. R. Roe, A. Roitberg, C. Sagui, C. L. Simmerling, W. M. Botello-Smith, J. Swails, R. C. Walker, J. Wang, R. M. Wolf, X. Wu, L. Xiao, P. A. Kollman, Amber 2016, University of California, San Fransisco, 2016,
  25. Doni Dermawan, Riyadi Sumirtanurdin, Deti Dewantisari, Molecular Dynamics Simulation Estrogen Receptor Alpha againts Andrographolide as Anti Breast Cancer, Indonesian Journal of Pharmaceutical Science Technology, 6, 2, (2019), 65-76 https://doi.org/10.24198/ijpst.v6i2.18168
  26. Samuel Genheden, Ulf Ryde, The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities, Expert Opinion on Drug Discovery, 10, 5, (2015), 449-461 https://doi.org/10.1517/17460441.2015.1032936
  27. Jacob Kongsted, Ulf Ryde, An improved method to predict the entropy term with the MM/PBSA approach, Journal of Computer-Aided Molecular Design, 23, 2, (2009), 63-71 https://doi.org/10.1007/s10822-008-9238-z
  28. Changhao Wang, D'Artagnan Greene, Li Xiao, Ruxi Qi, Ray Luo, Recent Developments and Applications of the MMPBSA Method, Frontiers in Molecular Biosciences, 4, (2018), 87 https://doi.org/10.3389/fmolb.2017.00087
  29. Lei Xu, Huiyong Sun, Youyong Li, Junmei Wang, Tingjun Hou, Assessing the Performance of MM/PBSA and MM/GBSA Methods. 3. The Impact of Force Fields and Ligand Charge Models, The Journal of Physical Chemistry B, 117, 28, (2013), 8408-8421 https://doi.org/10.1021/jp404160y
  30. I. R. Hartanti, A. A. Putri, N. N. Auliya AS, A. L. Triadenda, E. Laelasari, C. Suhandi, M. Muchtaridi, Molecular Docking Senyawa Xanton, Benzofenon, dan Triterpenoid Sebagai Antidiabetes dari Ekstrak Tumbuhan Garcinia cowa, Jurnal Kimia (Journal of Chemistry), 16, 1, (2022), 72-83 https://doi.org/10.24843/JCHEM.2022.v16.i01.p10
  31. Rizky Resvita R. Bahi, Rina Herowati, Nuraini Harmastuti, Studi Biokemoinformatika Kandungan Kimia Daun Sambiloto (Andrographis paniculata (Burm.f.) Nees) sebagai Antihiperglikemia serta Prediksi Parameter Farmakokinetik dan Toksisitas, PHARMACY: Jurnal Farmasi Indonesia (Pharmaceutical Journal of Indonesia), 17, 2, (2020), 466-477 http://dx.doi.org/10.30595/pharmacy.v17i2.8944
  32. Andi Anugrah Pratama, Yusnita Rifai, Asnah Marzuki, Docking Molekuler Senyawa 5,5’-Dibromometilsesamin, Majalah Farmasi dan Farmakologi, 21, 3, (2017), 67-69 https://doi.org/10.20956/mff.v21i3.6857
  33. Holger Steuber, Matthias Zentgraf, Alberto Podjarny, Andreas Heine, Gerhard Klebe, High-resolution Crystal Structure of Aldose Reductase Complexed with the Novel Sulfonyl-pyridazinone Inhibitor Exhibiting an Alternative Active Site Anchoring Group, Journal of Molecular Biology, 356, 1, (2006), 45-56 https://doi.org/10.1016/j.jmb.2005.10.067
  34. Holger Steuber, Andreas Heine, Alberto Podjarny, Gerhard Klebe, Merging the Binding Sites of Aldose and Aldehyde Reductase for Detection of Inhibitor Selectivity-determining Features, Journal of Molecular Biology, 379, 5, (2008), 991-1016 https://doi.org/10.1016/j.jmb.2008.03.063
  35. Rizka Amalia, Molecular Dinamik Senyawa Turunan Benzimidazol Sebagai Inhibitor Kolinesterase, Prosiding Seminar Nasional dan Penelitian Kesehatan 2018, 2019
  36. Oyinlola Oluwunmi Olaokun, Sizakele Annousca Manonga, Muhammad Sulaiman Zubair, Saipul Maulana, Nqobile Monate Mkolo, Molecular Docking and Molecular Dynamics Studies of Antidiabetic Phenolic Compound Isolated from Leaf Extract of Englerophytum magalismontanum (Sond.) T.D.Penn, Molecules, 27, 10, (2022), 3175 https://doi.org/10.3390/molecules27103175

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